Synthetic and Systems Biotechnology in Food Sciences
Applied Food Biotechnology,
Vol. 11 No. 2 (2024),
26 October 2024
,
Page e1
https://doi.org/10.22037/afb.v11i2.47151
Abstract
Background and Objective: Food biotechnology significantly impacts the food industry and human health. Many advanced investigations are involved in the ongoing development of food quality and safety. Introducing the critical cutting-edge features of research in food biotechnology is the main aim of this special issue. Application of nanotechnology as a multidisciplinary field to develop food safety and production, using microbiota as the modulators of body immunity against stresses, introducing bioinformatics tools to evaluate food microbial contamination, using systems biology assessment to explore the efficient and safe food preservative agents, evaluating food bioprocess protocols such as fermentation, presentation of advanced bioremediation techniques for detoxification of environmental toxins heavy metals, and highlighting significant progress in engineered edible probiotic vaccines are presented and discussed to provide new perspective of food biotechnology. Understanding and using the close relationship between technology development and food quality and safety improvement is accentuated as a continuous effort in food biotechnology research.
Results and Conclusion: The special issue illustrates the impact of multi-disciplinary research and highlights the need to develop new technologies in the food industry, especially multi-omics systems biology technologies and synthetic biotechnology. The major three topics presented based on systems biology include role of biopreservative agents in food safety. Collaboration between traditional knowledge and newly introduced approaches will accelerate future food biotechnology achievements.
Conflict of interest: The authors declare no conflict of interest.
- Introduction
The food industry and biotechnology development are associated closely with human health and lifestyle investigations. Indeed, different roles of biotech-nology may lead to increased immunity and safety in food sectors, e.g., by incorporating microalgae and/ or probiotics into food and microbial metabolites with medicinal and industrial applications [1-10]. So, evaluating the latest technological trends and advan-cements is critical in food biotechnology. Advanced efficient production, quality maintenance during storage, and achieving food safety standards require alterations and progressions in the related technol-ogies. The human body's response to the intake of certain foods in the short and long term is the best tool to display the quality and safety of diet and the applied technology. The high throughput methods such as genomics, transcriptomics, proteomics, and metabol-omics accompanied by bioinformatics have attracted the attention of experts in biology, medicine, pharmacology, and food sciences and technologies. Application of artificial intelligence, introduction of advanced software and databases, and representation of different models; have provided a new window to solve the complex problems in the various fields of human health. Today, the systems biology approach is a well-known trend for investigating the unsolved complications in the mentioned arenas. It is expected that the mass production of data and optimum organization and interpretation of findings could create a new perspective on human needs and environmental sources such as food. Collaboration between traditional knowledge and newly introduced approaches will accelerate future food biotechnology achievements. The articles presented in this research topic provide an overview of the impact of multi-disciplinary research and highlight the need to develop new technologies in the food industry, especially multi-omics systems biology technologies and syn-thetic biotechnology.
Three systems biology-based articles have been presented on this research topic.
Optimizing preservative agents using biotech-nology plays a crucial role in food safety. Evaluation of nisin effect on human health versus sodium benzoate (a chemical preservative) depicted in the research by Bandarian et al. [11]. The biological impact of yoghurt fermentation on human health is discussed in the study by Rostami Nejad et al. [12]. It is planned to find a suitable method to decrease the harmful effects of aflatoxin on the human body by Hamzehloo-Moghadam et al. [13].
A review article on this research topic addresses the issue of probiotics as dietary supplements and oral vaccines, which are an effective factor in human health. The potential of edible vaccines has been determined as safe vaccines in possible pathogenicity, good stimulation of mucosal and systematic immunity, and reasonable cost due to the lack of complex purification processes. Therefore, investigating the effectiveness of engineered probiotics based on novel genome editing tools and their challenges in genera-ting edible probiotic vaccines is to be considered [14]. Moreover, probiotics as live microorganisms can improve the gut microbiome to expand the optimistic role of the gut microbiome against the hostile side effects of chemotherapy and radiotherapy [15]. Chemotherapy and radiotherapy, the two common cancer treatment methods are accompanied by considerable side effects. Investigations have demon-strated substantial gastrointestinal disorders associated with chemotherapy and radiotherapy [16,17]. Evidence has pointed out the positive roles of microbiota in modifying these adverse effects and their severity in treated patients [18,19]. Today, probiotics are highlighted in food biotechnology and industry as an essential compound of several foods.
The environment contains essential elements for life, but industrialization has worsened pollution, especially from heavy metals, which threaten human health and ecosystems. The discussion presented by Fateminasab et al. highlights the rise of environmental toxins and the limitations of traditional pollution control, emphasizing the urgent need for advanced bioremediation techniques [20]. Toxic heavy metals like arsenic, cadmium, chromium, mercury, and lead pose serious health risks, particularly to children, with exposure occurring through contaminated food, water, and air. Bioremediation uses living organisms to detoxify pollutants. Probiotics can effectively elimin-ate these toxins from food. The report showcases microbes' potential in detoxifying heavy metals and notes the success of engineered microorganisms like recombinant E. coli in degrading waste and pollutants. Environmental factors such as humidity and temper-ature also impact microbial degradation. Additionally, various microbial species play a crucial role in detoxif-ying contaminants in water, soil, and air, with biofilm-mediated bioremediation emerging as a promising strategy for effective pollutant removal [20-24].
Finally, a review by Koushki et al. focuses on nanotechnology applications in the food industry [25]. They highlighted the considerable role of linking food science and nanotechnology as a multidisciplinary scientific field in protecting food safety, production, processing, and quality control.
- Conclusion
The special issue illustrates the impact of multi-disciplinary research and highlights the need to develop new technologies in the food industry, especially multi-omics systems biology technologies, and synthetic biotechnology. The major three topics presented based on systems biology include the role of bio-preservative agents in food safety. Collaboration between traditional knowledge and newly introduced approaches will accelerate future food biotechnology achievements.
- Acknowledgements
The authors appreciate all scientific support of the Research Vice-chancellor at Shahid Beheshti Univer-sity of Medical Sciences and Proteomics Research Center.
- Conflict of Interest
The authors declare no conflict of interest.
References
- Toranposhti TH, Hosseini FS, Rezaei M, Tahamtani Y. Bioactivity assay of microalgae: antioxidant and antidiabetic potentials in a transgenic zebrafish model. Appl Food Biotechnol. 2024; 11(1): e25.
https://doi.org/10.22037/afb.v11i1.45488
- Lestari SD, Hussain N, Hussin AS, Mustafa S, Sew YS. Bacillus multi-strain from malaysian fish sauces demonstrating proteolytic, lipolytic, esterolytic and glutamic-acid production activities. Appl Food Biotechnol. 2024; 11(1): e26.
https://doi.org/10.22037/afb.v11i1.45507
- Evelyn E, Chairul C, Sriningsih S, Aulia Y. Pulsed electric-field processing of orange juice containing paecilomyces variotii spores: comparisons to power ultrasound and thermal treatments. Appl Food Biotechnol. 2024; 11(1): e27.
https://doi.org/10.22037/afb.v11i1.45741
- Salimi F, Ahari H, Anvar SA, Moghanjoghi AM. Investigating antibacterial effects of nano-Ag/titanium dioxide on polylactic acid nanocomposites produced using extrusion method. Appl Food Biotechnol. 2024; 11(1): e28.
https://doi.org/10.22037/afb.v11i1.45932
- Shaikh SS, Joshi C, Malek F, Malik A, Gandhi M. Food Storage, Processing and genetic stability studies of Bacillus (Heyndrickxia) coagulans BCP92 (MTCC 25460). Appl Food Biotechnol. 2024; 11(1): e22.
https://doi.org/10.22037/afb.v11i1.44919
- Puspita AE, Pangastuti A, Listyawati S, Sari SL. Investigating untapped potentials: velvet beans as novel prebiotic sources and their effects on gut microbiota and short-chain fatty acid level. Appl Food Biotechnol. 2024; 11(1): e17.
https://doi.org/10.22037/afb.v11i1.44643
- Tsai CC, Lai ZY. Rapid identification and application of Lactobacillus plantarum, Lactobacillus paracasei and Lactobacillus pentosus using multiplex polymerase chain reaction and species-specific primers, targeting 16S ribosomal RNA and recA genes. Appl Food Biotechnol. 2024; 11(1): e24.
https://doi.org/10.22037/afb.v11i1.44863
- Sağlam H. Incorporation of microencapsulated and free Lactiplantibacillus plantarum to bitter chocolate: sensory and survival analyses. Appl Food Biotechnol. 2024; 11(1): e18.
https://doi.org/10.22037/afb.v11i1.44424
- Mazinani S, Fadaei V, Khosravi-Darani K. Impact of Spirulina platensis on physicochemical properties and viability of Lactobacillus acidophilus of probiotic UF Feta Cheese. J. Food Process Preserv. 2016; 40 (6): 1318-1324.
https://doi.org/10.1111/jfpp.12717
- Hooshdar P, Kermanshahi RK, Ghadam P, Khosravi-Darani K. A review on production of exopolysaccharide and biofilm in probiotics like lactobacilli and methods of analysis. Biointerface Res Appl Chem. 2020; 10(5): 6058-6075.
https://doi.org/10.33263/BRIAC105.60586075
- Bandarian F, Razi F, Razzaghi Z, Rostami Nejad M, Arjmand B, Rezaei-Tavirani M. The effect of sodium benzoate and nisin on human HepG2 cell gene expression. Appl Food Biotechnol. 2024; 11(2): e3.
https://doi.org/10.22037/afb.v11i2.45959
- Rostami Nejad M, Razi F, Razzaghi Z, Bandarian F, Arjmand B, Rezaei-Tavirani M. Assessing biological effects of yoghurt consumption against acidified milk: A System biology study. Appl Food Biotechnol. 2024; 11(2): e2.
https://doi.org/10.22037/afb.v11i2.45910
- Hamzehloo-Moghadam M, Asri N, Jahani Sherafat S, Mansouri V. Detection of aflatoxin contamination through biomarker discovery in human intestinal Caco-2 cells. Appl Food Biotechnol. 2024; 11(2): e4.
https://doi.org/10.22037/afb.v11i2.46449
- Hashemi N, Shams F, Sharif E, Bakhshi Valilou M. Recent advances in engineered edible probiotic vaccines: Promising agents in the effectiveness of probiotics. Appl Food Biotechnol. 2024; 11(2): e5
https://doi.org/10.22037/afb.v11i2.46302
- Talaei Mashhadi MR, Mousavi M, Khalili-Tanha G, Nazari E. Probiotics as an adjunct therapy for decreasing gastrointestinal complications from chemoradiotherapy. Appl Food Biotechnol. 2024; 11(2): e6
https://doi.org/10.22037/afb.v11i2.46338
- Nurgali K, Jagoe RT, Abalo R. Editorial: Adverse effects of cancer chemotherapy: Anything new to improve tolerance and reduce sequelae? Front Pharmacol. 2018; 9:245.
https://doi.org/10.3389/fphar.2018.00245
- Sipaviciute A, Sileika E, Burneckis A, Dulskas A. Late gastrointestinal toxicity after radiotherapy for rectal cancer: A systematic review. Int J Colorectal Dis. 2020; 35(6):977-983.
https://doi.org/10.1007/s00384-020-03595-x
- Tonneau M, Elkrief A, Pasquier D, Paz Del Socorro T, Chamaillard M, Bahig H, Routy B. The role of the gut microbiome on radiation therapy efficacy and gastrointestinal complications: A systematic review. Radiother Oncol. 2021; 156: 1-9.
https://doi.org/10.1016/j.radonc.2020.10.033
- Yin B, Wang X, Yuan F, Li Y, Lu P. Research progress on the effect of gut and tumor microbiota on antitumor efficacy and adverse effects of chemo-therapy drugs. Front Microbiol. 2022; 13: 899111.
https://doi.org/10.3389/fmicb.2022.899111
- Fateminasab F, Koushki M, Jafarian F, Mansouri V, Ahmadzadeh A, Amiri-Dashatan N, Farahani M. evaluating the efficacy of microbial interventions in heavy metal decontamination in the environment and food production systems. Appl Food Biotechnol. 2024; 11(2) e8.
http://doi.org/10.22037/afb.v11i2.46832
- Zoghi A, Khosravi‐Darani K, Sohrabvandi S, Attar H. Patulin removal from synbiotic apple juice using Lactobacillus plantarum ATCC 8014. J Appl Micro-biol. 2019; 126(4): 1149-1160.
https://doi.org/10.1111/jam.14172
- Hadiani MR, Khosravi-Darani K, Rahimifard N, Younesi H. Assessment of mercury biosorption by Saccharomyces cerevisiae: response surface method-logy for optimization of low Hg (II) concentrations. J Environ Chem Eng. 2018; 6(4): 4980-4987.
https://doi.org/10.1016/j.jece.2018.07.034
- Zoghi A, Salimi M, Mirmahdi RS, Massoud R, Khosravi-Darani K, Mohammadi R, Rouhi M, Tripathy AD. Effect of pretreatments on bioremoval of metals and subsequent exposure to simulated gastrointestinal conditions. Qual Assur Saf Crops Foods. 2022; 14(3): 145-155.
https://doi.org/10.15586/qas.v14i3.1012
- Sarlak Z, Khosravi-Darani K, Rouhi M, Garavand F, Mohammadi R, Sobhiyeh MR. Bioremediation of organophosphorus pesticides in contaminated food-stuffs using probiotics. Food Control. 2021; 126: 108006.
https://doi.org/10.1016/j.foodcont.2021.108006
- Koushki M, Amiri-Dashatan N, Pourghadamyari H, Khodabandehloo H, Bagheri F, Farahani M, Tayebi L. An overview of the relationship between the food industry and nano-technology. Appl Food Biotechnol. 2024; 11(2) e7.
http://dx.doi.org/10.22037/afb.v11i2.46737
- Food science
- Synthetic biotechnology
- Systems Biotechnology

How to Cite
References
Toranposhti TH, Hosseini FS, Rezaei M, Tahamtani Y. Bioactivity assay of microalgae: antioxidant and antidiabetic potentials in a transgenic zebrafish model. Appl Food Biotechnol. 2024; 11(1): e25.https://doi.org/10.22037/afb.v11i1.45488
Lestari SD, Hussain N, Hussin AS, Mustafa S, Sew YS. Bacillus multi-strain from malaysian fish sauces demonstrating proteolytic, lipolytic, esterolytic and glutamic-acid production activities. Appl Food Biotechnol. 2024; 11(1): e26.https://doi.org/10.22037/afb.v11i1.45507
Evelyn E, Chairul C, Sriningsih S, Aulia Y. Pulsed electric-field processing of orange juice containing paecilomyces variotii spores: comparisons to power ultrasound and thermal treatments. Appl Food Biotechnol. 2024; 11(1): e27.https://doi.org/10.22037/afb.v11i1.45741
Salimi F, Ahari H, Anvar SA, Moghanjoghi AM. Investigating antibacterial effects of nano-Ag/titanium dioxide on polylactic acid nanocomposites produced using extrusion method. Appl Food Biotechnol. 2024; 11(1): e28.https://doi.org/10.22037/afb.v11i1.45932
Shaikh SS, Joshi C, Malek F, Malik A, Gandhi M. Food Storage, Processing and genetic stability studies of Bacillus (Heyndrickxia) coagulans BCP92 (MTCC 25460). Appl Food Biotechnol. 2024; 11(1): e22.https://doi.org/10.22037/afb.v11i1.44919
Puspita AE, Pangastuti A, Listyawati S, Sari SL. Investigating untapped potentials: velvet beans as novel prebiotic sources and their effects on gut microbiota and short-chain fatty acid level. Appl Food Biotechnol. 2024; 11(1): e17.https://doi.org/10.22037/afb.v11i1.44643
Tsai CC, Lai ZY. Rapid identification and application of Lactobacillus plantarum, Lactobacillus paracasei and Lactobacillus pentosus using multiplex polymerase chain reaction and species-specific primers, targeting 16S ribosomal RNA and recA genes. Appl Food Biotechnol. 2024; 11(1): e24.https://doi.org/10.22037/afb.v11i1.44863
Sağlam H. Incorporation of microencapsulated and free Lactiplantibacillus plantarum to bitter chocolate: sensory and survival analyses. Appl Food Biotechnol. 2024; 11(1): e18.https://doi.org/10.22037/afb.v11i1.44424
Mazinani S, Fadaei V, Khosravi-Darani K. Impact of Spirulina platensis on physicochemical properties and viability of Lactobacillus acidophilus of probiotic UF Feta Cheese. J. Food Process Preserv. 2016; 40 (6): 1318-1324.https://doi.org/10.1111/jfpp.12717
Hooshdar P, Kermanshahi RK, Ghadam P, Khosravi-Darani K. A review on production of exopolysaccharide and biofilm in probiotics like lactobacilli and methods of analysis. Biointerface Res Appl Chem. 2020; 10(5): 6058-6075.https://doi.org/10.33263/BRIAC105.60586075
Bandarian F, Razi F, Razzaghi Z, Rostami Nejad M, Arjmand B, Rezaei-Tavirani M. The effect of sodium benzoate and nisin on human HepG2 cell gene expression. Appl Food Biotechnol. 2024; 11(2): e3.https://doi.org/10.22037/afb.v11i2.45959
Rostami Nejad M, Razi F, Razzaghi Z, Bandarian F, Arjmand B, Rezaei-Tavirani M. Assessing biological effects of yoghurt consumption against acidified milk: A System biology study. Appl Food Biotechnol. 2024; 11(2): e2.https://doi.org/10.22037/afb.v11i2.45910
Hamzehloo-Moghadam M, Asri N, Jahani Sherafat S, Mansouri V. Detection of aflatoxin contamination through biomarker discovery in human intestinal Caco-2 cells. Appl Food Biotechnol. 2024; 11(2): e4.https://doi.org/10.22037/afb.v11i2.46449
Hashemi N, Shams F, Sharif E, Bakhshi Valilou M. Recent advances in engineered edible probiotic vaccines: Promising agents in the effectiveness of probiotics. Appl Food Biotechnol. 2024; 11(2): e5https://doi.org/10.22037/afb.v11i2.46302
Talaei Mashhadi MR, Mousavi M, Khalili-Tanha G, Nazari E. Probiotics as an adjunct therapy for decreasing gastrointestinal complications from chemoradiotherapy. Appl Food Biotechnol. 2024; 11(2): e6https://doi.org/10.22037/afb.v11i2.46338
Nurgali K, Jagoe RT, Abalo R. Editorial: Adverse effects of cancer chemotherapy: Anything new to improve tolerance and reduce sequelae? Front Pharmacol. 2018; 9:245. https://doi.org/10.3389/fphar.2018.00245
Sipaviciute A, Sileika E, Burneckis A, Dulskas A. Late gastrointestinal toxicity after radiotherapy for rectal cancer: A systematic review. Int J Colorectal Dis. 2020; 35(6):977-983. https://doi.org/10.1007/s00384-020-03595-x
Tonneau M, Elkrief A, Pasquier D, Paz Del Socorro T, Chamaillard M, Bahig H, Routy B. The role of the gut microbiome on radiation therapy efficacy and gastrointestinal complications: A systematic review. Radiother Oncol. 2021; 156: 1-9.https://doi.org/10.1016/j.radonc.2020.10.033
Yin B, Wang X, Yuan F, Li Y, Lu P. Research progress on the effect of gut and tumor microbiota on antitumor efficacy and adverse effects of chemo-therapy drugs. Front Microbiol. 2022; 13: 899111.https://doi.org/10.3389/fmicb.2022.899111
Fateminasab F, Koushki M, Jafarian F, Mansouri V, Ahmadzadeh A, Amiri-Dashatan N, Farahani M. evaluating the efficacy of microbial interventions in heavy metal decontamination in the environment and food production systems. Appl Food Biotechnol. 2024; 11(2) e8.http://doi.org/10.22037/afb.v11i2.46832
Zoghi A, Khosravi‐Darani K, Sohrabvandi S, Attar H. Patulin removal from synbiotic apple juice using Lactobacillus plantarum ATCC 8014. J Appl Micro-biol. 2019; 126(4): 1149-1160.https://doi.org/10.1111/jam.14172
Hadiani MR, Khosravi-Darani K, Rahimifard N, Younesi H. Assessment of mercury biosorption by Saccharomyces cerevisiae: response surface method-logy for optimization of low Hg (II) concentrations. J Environ Chem Eng. 2018; 6(4): 4980-4987.https://doi.org/10.1016/j.jece.2018.07.034
Zoghi A, Salimi M, Mirmahdi RS, Massoud R, Khosravi-Darani K, Mohammadi R, Rouhi M, Tripathy AD. Effect of pretreatments on bioremoval of metals and subsequent exposure to simulated gastrointestinal conditions. Qual Assur Saf Crops Foods. 2022; 14(3): 145-155.https://doi.org/10.15586/qas.v14i3.1012
Sarlak Z, Khosravi-Darani K, Rouhi M, Garavand F, Mohammadi R, Sobhiyeh MR. Bioremediation of organophosphorus pesticides in contaminated food-stuffs using probiotics. Food Control. 2021; 126: 108006.https://doi.org/10.1016/j.foodcont.2021.108006
Koushki M, Amiri-Dashatan N, Pourghadamyari H, Khodabandehloo H, Bagheri F, Farahani M, Tayebi L. An overview of the relationship between the food industry and nano-technology. Appl Food Biotechnol. 2024; 11(2) e7.http://dx.doi.org/10.22037/afb.v11i2.46737
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