The Trends in Peptide and Protein Sciences (Trends Pept. Protein Sci.) is a peer-reviewed, online-only (previously print-online), scientific journal owned by Protein Technology Research Center, Shahid Beheshti University of Medical Sciences and publish the documents in all important aspects of the research in peptides and proteins focusing on analytics and impurities, bioinformatics, biopharmaceuticals and vaccines, biotechnology, chemical synthesis, conformational analysis, design and  development of protein therapeutics, determination of structure, enzymology, folding and sequencing,  formulation and stability, function, genetics,  immunology, kinetics, modeling, molecular biology, pharmacokinetics and pharmacodynamics of therapeutic proteins and antibodies, pharmacology,  protein engineering and development, protein-protein interaction, proteomics, purification/expression/production, simulation, thermodynamics and  hydrodynamics and protein biomarkers. The aim of this Journal is to publish high quality original research articles, reviews, short communications and letters and to provide a medium for scientists and researchers to share their findings from the area of peptides and proteins. The Trends in Peptide and Protein Sciences is published in collaboration with Iranian Association of Pharmaceutical Scientists.

The Trends in Peptide and Protein Sciences has been granted the Scientific-Research Rank  by the Commission of Medical Sciences Journals of Ministry of Health, Treatment and Medical Education of I.R. Iran.

From volume 3 (2018) of TPPS, articles are continuously published online only, as soon as the review process is completed.

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Journal Info

Publisher:

Protein Technology Research Center, Shahid Beheshti University of Medical Sciences

Journal Name:

Trends in Peptide and Protein Sciences (TPPS)

Journal Abbreviation:

Trends Pept. Protein Sci.

eISSN:

2538-2446

Chairperson:

Reza Aboofazeli; PhD

Editor-in-Chief:

Bahram Kazemi; PhD

Managing Editor:

Maryam Tabarzad; PhD

Email:

TEL:

Telegram:

tipps@sbmu.ac.ir

+98 21 88648124 (8 a. m. to 4 p. m. Tehran, GMT+3.30)

+98 9380414297

Journal Trends in Peptide and Protein Sciences

@tpps_journal 

 

                            
 

Indexing in Embase

We are pleased to announce that the journal, "Trends in Peptide and Protein Sciences" was positively evaluated in Embase indexing

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Call for Papers: Electronic Volume 9 (2024)

Happy New Year We are pleased to invite your manuscript submissions to the electronic volume 9 (2024) of Trends in Peptide and Protein Sciences (TPPS). Based on the new TPPS publication policies, articles will be continuously published online only from 2018 ....

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Indexing in Indexcopernicus (ICI Journals Master List)

We would like to inform you that the journal Trends in Peptide and Protein Sciences (ISSN: 2538-2535) has passed the evaluation process positively and is indexed in the ICI Journals Master List database for 2022 . Based on the information submitted in the evaluation and the analysis of the issues of the journal from 2019, Index Copernicus Experts calculated the TPPS Index Copernicus Value (ICV) for 2022. ICV 2022: 76.99

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In Silico Evaluation of Antimicrobial Potential of Amaranth, Chia and Quinoa Peptides Released During the Simulated Gastric Digestion and Their Effects on Helicobacter pylori

Esra Menfaatli, Murat Kavruk, Ersin Gundeger

Trends in Peptide and Protein Sciences, Vol. 9 No. 1 (2024), 31 January 2024, Page 1-8 (e2)

Helicobacter pylori is the most common cause of peptic ulcers and gastroduodenal pathologies and has been identified by the World Health Organization as a serious threat to human health. The increasing antibiotic resistance of H. pylori necessitates prevention and early intervention, as well as the discovery of novel drugs. Amaranth, chia, and quinoa are classified as pseudocereals and are known as superfoods because of their nutritional density. The effect of consuming these pseudocereals at the onset of H. pylori infection was investigated using in silico methods. 34 proteins from amaranth, chia, and quinoa were subjected to in silico pepsin digestion, and antimicrobial, antibiofilm, and cell-penetrating activities of the released peptides were analyzed. Peptides predicted to be cell-penetrating were further used for peptide-protein docking. 58 peptides were predicted to have antimicrobial activity whereas 76 were predicted to have antibiofilm activity. A total of 116 peptides were classified as cell-penetrating peptides, and those with the highest scores were used for peptide-protein docking with shikimate dehydrogenase, type II dehydroquinase, and D-alanine-D-alanine ligase of H. pylori to evaluate their enzyme inhibition potential. A peptide released from the chia seed proteins A0A1Z1EC55 and A0A1Z1EC46 with the sequence SWKYSHRRHHSNTGSL gave the highest docking energy scores for all three enzymes. To the best of our knowledge, this is the first work concerning the effect of ingested food on H. pylori infection. We believe our results will provide valuable data and a new point of view for the scientists interested in this topic.

HIGHLIGHTS

  • H. pylori is a common infection and the leading cause of gastroduodenal pathologies.
  • Gastric digestion of amaranth, chia, and quinoa proteins with pepsin revealed antimicrobial and antibiofilm peptides that may be effective against H. pylori growth.
  • One particular peptide SWKYSHRRHHSNTGSL had high docking energy scores when docked to the three enzymes of H. pylori.

Importance of Bioactive Peptides Derived from Cyanobacteria

Bahareh Alizadeh, Maryam Tabarzad

Trends in Peptide and Protein Sciences, Vol. 9 No. 1 (2024), 31 January 2024, Page 1-5 (e1)

Cyanobacterial peptides are a group of promising natural therapeutic agents that have been extensively studied in recent years. They can be valuable pharmaceuticals or lead compounds in developing novel therapeutics for various diseases, especially cancers, infections, and neurodegenerative diseases, which are the most important challenges of medicine today.

HIGHLIGHTS

  • Cyanobacteria are a valuable source of natural metabolites, including bioactive peptides.
  • Cyanobacterial peptides include ribosomal synthesized and nonribosomal peptides (NRPs).
  • Therapeutic applications of cyanobacterial peptides in different diseases have been reported.

Cyanophycin as a Cyanobacterial Granule Polypeptide: Potential Sources and Applications

Maryam Tabarzad, Mohammad Vahid Tabarzad, Tahereh Hosseinabadi

Trends in Peptide and Protein Sciences, Vol. 9 No. 1 (2024), 31 January 2024, Page 1-9 (e3)

Cyanophycin is a distinctive biopolymer composed of a poly-aspartate backbone adorned with arginine side chains, produced by cyanobacteria and certain bacterial strains through the enzymatic activities of CphA1 and CphA2. The CphA1 enzyme engages aspartate and arginine in separate reactions, while CphA2 facilitates a more streamlined polymerization of β-Asp-Arg dipeptides, potentially enhancing its efficiency for biotechnological applications. Although cyanophycin is typically insoluble at neutral pH, it becomes soluble in highly acidic or alkaline environments, leading to the formation of large, inert granules that play essential biological roles. This biopolymer primarily acts as a storage reservoir for nitrogen, carbon, and energy, with its metabolic processes tightly regulated to enable organisms to adapt to fluctuating environmental conditions. Cyanophycin’s versatility spans multiple sectors, including biomedicine, where it shows promise as a biocompatible material for drug delivery systems and tissue engineering scaffolds. In industrial contexts, it is being investigated as a biodegradable substitute for synthetic polymers and utilized in water treatment applications due to its high viscosity. In agriculture, cyanophycin-derived dipeptides are considered potential nutritional supplements because of their excellent bioavailability. Furthermore, recent advancements in the heterologous expression of cyanophycin synthetases in various host organisms, including bacterial hosts such as E. coli, yeasts, and plants, aim to improve production yields and create hybrid materials with optimized properties. Collectively, the multifunctionality and biodegradability of cyanophycin position it as a strong candidate for diverse applications, underscoring the necessity for continued research and development to enhance its practical use and commercial feasibility. This mini-review article summarizes the cyanophycin potential sources, chemical modifications, and potential applications.

HIGHLIGHTS

  • Cyanophycin is a biopolymer of a poly-aspartate with arginine side chains.
  • Cyanophycin is synthesized by the enzyme cyanophycin synthetase (CphA).
  • Cyanophycin is extracted from cyanobacteria and is heterologously produced in bacteria, yeasts, and plants.
  • Cyanophycin has a wide range of industrial, biomedical, and cosmeceutical applications.