The Trends in Peptide and Protein Sciences (Trends Pept. Protein Sci.) is a peer-reviewed, online-only (previously print-online), scientific journal owned by Protein Technology Research Center, Shahid Beheshti University of Medical Sciences and publish the documents in all important aspects of the research in peptides and proteins focusing on analytics and impurities, bioinformatics, biopharmaceuticals and vaccines, biotechnology, chemical synthesis, conformational analysis, design and  development of protein therapeutics, determination of structure, enzymology, folding and sequencing,  formulation and stability, function, genetics,  immunology, kinetics, modeling, molecular biology, pharmacokinetics and pharmacodynamics of therapeutic proteins and antibodies, pharmacology,  protein engineering and development, protein-protein interaction, proteomics, purification/expression/production, simulation, thermodynamics and  hydrodynamics and protein biomarkers. The aim of this Journal is to publish high quality original research articles, reviews, short communications and letters and to provide a medium for scientists and researchers to share their findings from the area of peptides and proteins. The Trends in Peptide and Protein Sciences is published in collaboration with Iranian Association of Pharmaceutical Scientists.

The Trends in Peptide and Protein Sciences has been granted the Scientific-Research Rank  by the Commission of Medical Sciences Journals of Ministry of Health, Treatment and Medical Education of I.R. Iran.

From volume 3 (2018) of TPPS, articles are continuously published online only, as soon as the review process is completed.

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Journal Info

Publisher:

Protein Technology Research Center, Shahid Beheshti University of Medical Sciences

Journal Name:

Trends in Peptide and Protein Sciences (TPPS)

Journal Abbreviation:

Trends Pept. Protein Sci.

eISSN:

2538-2446

Chairperson:

Reza Aboofazeli; PhD

Editor-in-Chief:

Bahram Kazemi; PhD

Managing Editor:

Maryam Tabarzad; PhD

Email:

TEL:

Telegram:

tipps@sbmu.ac.ir

+98 21 88648124 (8 a. m. to 4 p. m. Tehran, GMT+3.30)

+98 9380414297

linkedin.com/in/journal-trends-in-peptide-and-protein-sciences-314817216

Call for Papers: Electronic Volume 8 (2023)

We are pleased to invite your manuscript submissions to the electronic volume 8 (2023) of Trends in Peptide and Protein Sciences (TPPS). Based on the new TPPS publication policies, articles will be continuously published online only from 2018 ....

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Indexing in Indexcopernicus (ICI Journals Master List)

We would like to inform that the journal „Trends in Peptide and Protein Sciences (ISSN: 2538-2535)” has passed the evaluation process positively and is indexed in the ICI Journals Master List database for 2019 . Based on the information submitted in the evaluation and the analysis of the issues of the journal from 2019, Index Copernicus Experts calculated TPPS Index Copernicus Value (ICV) for 2019. ICV 2019 = 74.91

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Partial Proteomics Analysis of Montivipera raddei Venom

Zohreh Jafari, Mojgan Bandehpour, Mohammad Kaboli, Bahram Kazemi

Trends in Peptide and Protein Sciences, Vol. 8 No. 1 (2023), 26 February 2023, Page 1-5 (e2)

The snake venom is a potent source of a variety of drugs and therapeutic components. This study aimed to isolate and characterize some of proteins in Montivipera raddei venom. The protein bands and spots obtained by SDS-PAGE and two-dimensional electrophoresis were analyzed. The separated protein spots based on isoelectric point and molecular weight were scattered in the 15 to 66 kDa ranges and pI from 5 to 8. Six proteins was more extensively characterized by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF/TOF) analysis. These characterized proteins included Zinc metalloproteinase-disintegrin-like ecarin, L-amino-acid oxidase, metalloproteinase kistomin, Thiamine-monophosphate kinase, Ancrod, Acidic phospholipase A2.

HIGHLIGHTS

  • Identification of several proteins from Montivipera raddei venom.
  • Characterization of the six high concentrated proteins by MALDI-TOF/TOF spectroscopy in venom.
  • Zinc metalloproteinase-disintegrin-like ecarin, L-amino-acid oxidase, metalloproteinase kistomin, Thiamine-monophosphate kinase, Ancrod, Acidic phospholipase A2 were identified in venom of Montivipera raddei.

Structural Characterization of a Novel Luciferase-Like-Monooxygenase from Pseudomonas meliae – An in-Silico Approach

Mohammad Rayhan, Mohd. Faijanur-Rob Siddiquee, Asif Shahriar, Hossain Ahmed, Aar Rafi Mahmud Efti, Muhammad Shaiful Alam, Muhammad Ramiz Uddin, Mrityunjoy Acharjee, Mst. Sharmin Sultana Shimu, Mohd. Shahir Shamsir, Talha Bin Emran

Trends in Peptide and Protein Sciences, Vol. 8 No. 1 (2023), 26 February 2023, Page 1-12(e3)

Luciferase is a well-known oxidative enzyme that produces bioluminescence. The Pseudomonas meliae is a plant pathogen that causes wood to rot on nectarine and peach and possesses a luciferase-like monooxygenase. After activation, it produces bioluminescence, and the pathogen’s bioluminescence is a visual indicator of contaminated plants. The present study aims to model and characterize the luciferase-like monooxygenase protein in P. meliae for its similarity to well-established luciferase. In this study, the luciferase-like monooxygenase from P. meliae infects chinaberry plants has been first modeled and then, studied by comparing it with existing known luciferase. In addition, the similarities between uncharacterized luciferase from P. meliae and the template from Geobacillus thermodenitrificans were analyzed. The results suggest that the absence of bioluminescence in P. meliae could be critical for the production of the luciferin substrate and the catalytic activity of the enzyme due to the evolutionary mutation in positions 138 and 311. The active site remains identical except for two amino acids. Therefore, mutation of the residues 138 and 311 in P. meliae Luciferase-like monooxygenase may restore luciferase light-emitting ability.

HIGHLIGHTS

  • Structural characterization of luciferase-like monooxygenase in P. meliae.
  • Bioluminescence can be used to evaluate antimicrobial efficacy by releasing light emissions.
  • Luciferase-like monooxygenase: a potential therapeutic candidate for clinical applications.

Synthesis and Characterization of Amyloid Beta-Lactoglobulin-Mumijo-Nanohydroxyapatite Complex: A New Composite for Bone Regeneration

Negar Khiabani, Azadeh Hekmat, Aghdas Banaei

Trends in Peptide and Protein Sciences, Vol. 8 No. 1 (2023), 26 February 2023, Page 1-10 (e4)

Mumijo is a traditional drug that has been used in traditional medicine for a long time and its aqueous extract is used for the treatment of osteoporosis and bone fractures. Besides, in modern medicine, nano-sized hydroxyapatite (nHA) has achieved immense attention for bone integration and regeneration of bony defects treatment. Since the frequency of accidental bone disorders and damage is growing worldwide, the need for artificial bone implants is increasing. Thus, in this study, the fibrillar beta-lactoglobulin (BLG)-Mumijo-nHA complex was synthesized and characterized by UV–Visible, fluorescence, Fourier transform infrared, circular dichroism spectroscopy, scanning electron microscopy, and zeta potential analysis. The results showed that the fibrillar BLG-Mumijo-nHA complex was formed. The results also confirmed that the complex had a negative surface charge and was moderately stable. Cell viability assays indicated that fibrillar BLG-Mumijo-nHA complex induced bone marrow-derived mesenchymal stem cell growth at higher concentrations. Although further experiments are warranted to draw firm conclusions, it could be proposed that the fibrillar BLG-Mumijo-nHA complex could be a good candidate for the treatment of osteoporosis and bone fractures.

Highlights

  • The fibrillar BLG-Mumijo-nHA complex was synthesized in detail.
  • UV-Visible, fluorescence emission, and CD spectroscopy as well as z-potential value confirmed the formation of a complex.
  • The complex could be a good candidate for tissue engineering.

Programmed Cell Death Ligand 1-Inhibiting MicroRNAs in Hepatocellular Carcinoma: A Systematic Review

Haleh Hamedifar, Parisa Lotfinejad, Zahra Asadzadeh, Nima Hemmat, Ali N. Kamali

Trends in Peptide and Protein Sciences, Vol. 8 No. 1 (2023), 26 February 2023, Page 1-14 (e1)

The Programmed cell death ligand-1 (PD-L1), an immune checkpoint molecule, is the ligand of Programmed cell death protein 1 (PD-1). They are crucial molecules in maintaining immune homeostasis. PD-L1/PD-1 axis regulates the initiation and maintenance of tolerance and protects tissues from autoimmune responses; however, cancer cells can use the PD-1/PD-1 axis to evade the anti-tumor response of immune cells. Increased PD-L1 expression is directly associated with poor prognosis in hepatocellular carcinoma (HCC). Although immunotherapy with immune checkpoint inhibitors (ICIs) are leading therapy in cancer treatment, using biomarkers to regulate immune checkpoints at the RNA level is considered a promising tool in novel therapeutic approaches. Increasing evidence has reported that miRNAs are critical regulators of tumor development. Hence, we performed a current systematic review to explore PD-L1 inhibiting miRNAs involved in hepatocellular carcinoma. Five databases were systemically searched to obtain the relevant original articles. Consequently, seventeen studies were included in the current systematic review. According to obtained literatures, some microRNAs, namely miR-194-5p, -675-5p, 194-5p, -1, -455-5p, -223-3p, -513, -195, -506, -329-3p, -424, -411-5p, -182-5p, -200, -378a-3p, -570, -200c, and -513a-5p can inhibit PD-L1 expression in HCC cells. These can ultimately reduce tumor proliferation, inhibit tumor migration, stimulate the chemosensitivity of cancer cells, and induce apoptosis in tumor cells. Moreover, the investigated miRNAs were further analyzed using miRNA target prediction online tools to highlight the future direction of their functions in HCC.

HIGHLIGHTS

  • Cancer cells can use the PD-1/PD-1 axis to evade the anti-tumor response of immune cells.
  • Increased PD-L1 expression is directly associated with poor prognosis in hepatocellular carcinoma.
  • Several microRNAscan inhibit PD-L1 expression in HCC cells.