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Vol. 4 No. 1 (2020)

January 2020

Primary Congenital Glaucoma: Detecting Novel Disease-Causing Variants Using Whole-Exome Sequencing and Pathway Analysis

  • Parisima Ghaffarian Zavarzadeh
  • Bita Shalbafan
  • Fatemeh Abdi

Journal of Ophthalmic and Optometric Sciences, Vol. 4 No. 1 (2020), 6 January 2020 , Page 43-59
https://doi.org/10.22037/joos.v4i1.36899 Published: 2020-01-01

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Abstract

Abstract
Primary Congenital Glaucoma (PCG) is an irreversible loss of vision that occurs mainly in infants or in the first years of life. In addition to numerous sporadic cases, PCG exhibits both an autosomal recessive and an autosomal dominant mode of inheritance. The genetic etiology of the disease is not fully understood; however, the role of genes such as CYP1B1, MYOC, LTBP2, and TEK is recognized. Various molecular biology approaches have been developed to study various diseases’ genetic and signaling patterns, especially PCG. Due to the genetic etiology is essential to consider genetic counseling for patients and their families who tend to be at higher risk and eventually reduce the prevalence of ocular diseases. In this review, in addition to examining various aspects of the disease, we specifically focused on the Molecular and Genetic Basis of PCG, including a small aspect of whole-Exome Sequencing to detect novel disease-causing variants.
Keywords: Cytochrome P-450 CYP1B1; Glaucoma; Genetic Counseling; Whole-Exome Sequencing.

Keywords:
  • Cytochrome P-450 CYP1B1
  • Genetic counseling
  • Glaucoma
  • Whole-Exome Sequencing
  • pdf

How to Cite

Ghaffarian Zavarzadeh, P. ., Shalbafan, B., & Abdi, F. . (2020). Primary Congenital Glaucoma: Detecting Novel Disease-Causing Variants Using Whole-Exome Sequencing and Pathway Analysis. Journal of Ophthalmic and Optometric Sciences, 4(1), 43–59. https://doi.org/10.22037/joos.v4i1.36899
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References

References

Huang X, Li M, Guo X, Li S, Xiao X, Jia X, et al. Mutation analysis of seven known glaucoma-associated genes in Chinese patients with glaucoma. Invest Ophthalmol Vis Sci. 2014;55(6):3594-602.

Badawi AH, Al-Muhaylib AA, Al Owaifeer AM, Al-Essa RS, Al-Shahwan SA. Primary congenital glaucoma: An updated review. Saudi J Ophthalmol. 2019;33(4):382-8.

Chouiter L, Nadifi S. Analysis of CYP1B1 Gene Mutations in Patients with Primary Congenital Glaucoma. J Pediatr Genet. 2017;6(4):205-14.

Faiq M, Mohanty K, Dada R, Dada T. Molecular Diagnostics and Genetic Counseling in Primary Congenital Glaucoma. J Curr Glaucoma Pract. 2013;7(1):25-35.

Suri F, Yazdani S, Elahi E. Glaucoma in iran and contributions of studies in iran to the understanding of the etiology of glaucoma. J Ophthalmic Vis Res. 2015;10(1):68-76.

Sunderland DK, Sapra A. Physiology, Aqueous Humor Circulation. StatPearls [Internet]. 2022.

Abu-Amero KK, Edward DP. Primary congenital glaucoma. 2017.

Fan BJ, Wiggs JL. Glaucoma: genes, phenotypes, and new directions for therapy. The Journal of clinical investigation. 2010;120(9):3064-72.

Ferre-Fernández J-J, Aroca-Aguilar J-D, Medina-Trillo C, Bonet-Fernández J-M, Méndez-Hernández C-D, Morales-Fernández L, et al. Whole-Exome Sequencing of Congenital Glaucoma Patients Reveals Hypermorphic Variants in GPATCH3, a New Gene Involved in Ocular and Craniofacial Development. Scientific Reports. 2017;7(1):46175.

Gupta S, Chatterjee S, Mukherjee A, Mutsuddi M. Whole exome sequencing: Uncovering causal genetic variants for ocular diseases. Exp Eye Res. 2017;164:139-50.

ophthalmology clinic: A review. Clin Exp Ophthalmol. 2021;49(6):615-25.

Cascella R, Strafella C, Germani C, Novelli G, Ricci F, Zampatti S, et al. The Genetics and the Genomics of Primary Congenital Glaucoma. BioMed Research International. 2015;2015:321291.

Ling C, Zhang D, Zhang J, Sun H, Du Q, Li X. Updates on the molecular genetics of primary congenital glaucoma (Review). Experimental and therapeutic medicine. 2020;20(2):968-77.

Lang E, Koller S, Bähr L, Töteberg-Harms M, Atac D, Roulez F, et al. Exome sequencing in a Swiss childhood glaucoma cohort reveals CYP1B1 and FOXC1 variants as most frequent causes. Translational vision science & technology. 2020;9(7):47.

Bejjani BA, Lewis RA, Tomey KF, Anderson KL, Dueker DK, Jabak M, et al. Mutations in CYP1B1, the gene for cytochrome P4501B1, are the predominant cause of primary congenital glaucoma in Saudi Arabia. Am J Hum Genet. 1998;62(2):325-33.

Kim HJ, Suh W, Park SC, Kim CY, Park KH, Kook MS, et al. Mutation spectrum of CYP1B1 and MYOC genes in Korean patients with primary congenital glaucoma. Mol Vis. 2011;17:2093-101.

Kim H-J, Suh W, Park SC, Kim CY, Park KH, Kook MS, et al. Mutation spectrum of CYP1B1 and MYOC genes in Korean patients with primary congenital glaucoma. Molecular vision. 2011;17:2093.

Ali M, McKibbin M, Booth A, Parry DA, Jain P, Riazuddin SA, et al. Null mutations in LTBP2 cause primary congenital glaucoma. American journal of human genetics. 2009;84(5):664-71.

Narooie-Nejad M, Paylakhi SH, Shojaee S, Fazlali Z, Rezaei Kanavi M, Nilforushan N, et al. Loss of function mutations in the gene encoding latent transforming growth factor beta binding protein 2, LTBP2, cause primary congenital glaucoma. Human molecular genetics. 2009;18(20):3969-77.

Micheal S, Siddiqui SN, Zafar SN, Iqbal A, Khan MI, den Hollander AI. Identification of Novel Variants in LTBP2 and PXDN Using Whole-Exome Sequencing in Developmental and Congenital Glaucoma. PLoS One. 2016;11(7):e0159259.

Chakrabarti S, Kaur K, Komatireddy S, Acharya M, Devi KR, Mukhopadhyay A, et al. Gln48His is the prevalent myocilin mutation in primary open angle and primary congenital glaucoma phenotypes in India. Mol Vis. 2005;11:111-3.

Mousavian Z, Díaz J, Masoudi-Nejad A. Information theory in systems biology. Part II: protein-protein interaction and signaling networks. Seminars in cell & developmental biology. 2016;51:14-23.

Mousavian Z, Kavousi K, Masoudi-Nejad A. Information theory in systems biology. Part I: Gene regulatory and metabolic networks. Seminars in Cell and Developmental Biology. 2016;51:3-13.

Masoudi-Nejad A, Goto S, Endo TR, Kanehisa M. KEGG bioinformatics resource for plant genomics research. Methods in molecular biology (Clifton, NJ). 2007;406:437-58.

Ghasemi M, Seidkhani H, Tamimi F, Rahgozar M, Masoudi-Nejad A. Centrality Measures in Biological Networks. Current Bioinformatics. 2014;9(4):426-41.

H L, S N, S H, M T-A, F K, M M-J, et al. High-throughput analysis of the interactions between viral proteins and host cell RNAs. Computers in biology and medicine. 2021;135:104611.

Torkamanian-Afshar M, Lanjanian H, Nematzadeh S, Tabarzad M, Najafi A, Kiani F, et al. RPINBASE: An online toolbox to extract features for predicting RNA-protein interactions. Genomics. 2020;112(3).

Masoudi-Sobhanzadeh Y, Omidi Y, Amanlou M, Masoudi-Nejad A. Trader as a new optimization algorithm predicts drug-target interactions efficiently. Scientific Reports 2019 9:1. 2019;9(1):1-14.

Nair KS, Srivastava C, Brown RV, Koli S, Choquet H, Kang HS, et al. GLIS1 regulates trabecular meshwork function and intraocular pressure and is associated with glaucoma in humans. Nature Communications. 2021;12(1):4877.

Jeoung JW, Ko JH, Kim YJ, Kim YW, Park KH, Oh JY. Microarray-based analysis of gene expression profiles in peripheral blood of patients with acute primary angle closure. Ophthalmic Genet. 2017;38(6):520-6.

Shah BR, Xu W, Mraz J. Cytochrome P450 1B1: role in health and disease and effect of nutrition on its expression. RSC advances. 2019;9(36):21050-62.

Itakura T, Peters DM, Fini ME. Glaucomatous MYOC mutations activate the IL-1/NF-κB inflammatory stress response and the glaucoma marker SELE in trabecular meshwork cells. Mol Vis. 2015;21:1071-84.

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