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  3. Vol 16, No 1 (2023): Winter
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ISSN: 2008-2258

Vol 16, No 1 (2023): Winter

Development and evaluation of a semi-nested PCR technique for amplification and determination of different surface gene variation patterns in patients with chronic HBV infection: development of an amplification method for HBV S gene Development of a semi-nested PCR test for surface gene amplification

  • Fedra Mokhtari
  • Hami Kaboosi
  • Seyed Reza Mohebbi
  • Hamid Asadzadeh Aghdaei
  • Mohammad Reza Zali

Gastroenterology and Hepatology from Bed to Bench, ,
https://doi.org/10.22037/ghfbb.v16i1.2583 Published 31 December 2022

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Abstract

Aim: Development of a semi nested PCR method for HBV Surface gene amplification


Background: Pre-S/S variants in patients with chronic HBV infection may contribute to the progression of liver damages and HCC.


Methods: This study was performed on 10 patients with chronic HBV infection. DNA was extracted from patients' blood, primer design was performed, and a semi nested PCR method was used to amplify preS/S region. Subsequently, sequencing was performed to analyze the variants of this region.


Results: In the current study, the semi nested PCR method was successfully set up and the variants such as deletion in the studied samples were investigated.


Conclusion: Pre-S/S variants should be routinely determined in HBV carriers to help identify individuals who may be at a high risk of less favorable liver disease progression and the technique we used in this field has been useful and can lead to accurate analysis of the pre-S/S region in terms of variants.

Keywords:
  • Hepatitis B virus
  • HBsAg gene
  • PreS variations
  • Semi Nested PCR

How to Cite

Mokhtari, F., Kaboosi, H., Mohebbi, S. R., Asadzadeh Aghdaei, H., & Zali, M. R. (2022). Development and evaluation of a semi-nested PCR technique for amplification and determination of different surface gene variation patterns in patients with chronic HBV infection: development of an amplification method for HBV S gene: Development of a semi-nested PCR test for surface gene amplification. Gastroenterology and Hepatology from Bed to Bench, 16(1). https://doi.org/10.22037/ghfbb.v16i1.2583
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References

1. Li, F., et al., The preS deletion of hepatitis B virus (HBV) is associated with liver fibrosis progression in patients with chronic HBV infection. Hepatology international, 2018. 12(2): p. 107-117.
2. Chen, B.-F., Hepatitis B virus pre-S/S variants in liver diseases. World journal of gastroenterology, 2018. 24(14): p. 1507.
3. Meier-Stephenson, V., et al., Identification and characterization of a G-quadruplex structure in the pre-core promoter region of hepatitis B virus covalently closed circular DNA. Journal of Biological Chemistry, 2021. 296.
4. Li, X., et al., PreS deletion profiles of hepatitis B virus (HBV) are associated with clinical presentations of chronic HBV infection. Journal of Clinical Virology, 2016. 82: p. 27-32.
5. Teng, C.-F., et al., Hepatitis B virus pre-S2 deletion (nucleotide 1 to 54) in plasma predicts recurrence of hepatocellular carcinoma after curative surgical resection. PloS one, 2020. 15(11): p. e0242748.
6. Wungu, C.D.K., et al., Meta‐analysis: Association between hepatitis B virus preS mutation and hepatocellular carcinoma risk. Journal of Viral Hepatitis, 2021. 28(1): p. 61-71.
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GHFBB journal is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International License (CC BY-NC 4.0).

Print ISSN: 2008-2258
Online ISSN: 2008-4234

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