Gastroenterology and Hepatology from Bed to Bench

Liu, L., et al., Global, regional, and national causes of child mortality in 2000-13, with projections to inform post-2015 priorities: an updated systematic analysis. Lancet, 2015. 385(9966): p. 430-40.

Livio, S., et al., Shigella isolates from the global enteric multicenter study inform vaccine development. Clin Infect Dis, 2014. 59(7): p. 933-41.

Lanata, C.F., et al., Global causes of diarrheal disease mortality in children <5 years of age: a systematic review. PLoS One, 2013. 8(9): p. e72788.

Kirk, M.D., et al., World Health Organization Estimates of the Global and Regional Disease Burden of 22 Foodborne Bacterial, Protozoal, and Viral Diseases, 2010: A Data Synthesis. PLoS Med, 2015. 12(12): p. e1001921.

Kotloff, K.L., et al., Global burden of Shigella infections: implications for vaccine development and implementation of control strategies. Bull World Health Organ, 1999. 77(8): p. 651-66.

Toma, C., et al., Multiplex PCR assay for identification of human diarrheagenic Escherichia coli. J Clin Microbiol, 2003. 41(6): p. 2669-71.

Nguyen, T.V., et al., Detection and characterization of diarrheagenic Escherichia coli from young children in Hanoi, Vietnam. J Clin Microbiol, 2005. 43(2): p. 755-60.

Rajendran, P., et al., Pathotypes of diarrheagenic Escherichia coli in children attending a tertiary care hospital in South India. Diagn Microbiol Infect Dis, 2010. 68(2): p. 117-22.

Clarke, D.J., et al., Complete genome sequence of the Crohn's disease-associated adherent-invasive Escherichia coli strain HM605. J Bacteriol, 2011. 193(17): p. 4540.

Barnich, N. and A. Darfeuille-Michaud, Adherent-invasive Escherichia coli and Crohn's disease. Curr Opin Gastroenterol, 2007. 23(1): p. 16-20.

Sang, W.K., et al., Prevalence and genetic characteristics of Shigatoxigenic Escherichia coli from patients with diarrhoea in Maasailand, Kenya. J Infect Dev Ctries, 2012. 6(2): p. 102-8.

Bii, C.C., et al., Detection of virulence-related genes by multiplex PCR in multidrug-resistant diarrhoeagenic Escherichia coli isolates from Kenya and Japan. Epidemiol Infect, 2005. 133(4): p. 627-33.

Onyango, A.O., et al., Pathogenic Escherichia coli and food handlers in luxury hotels in Nairobi, Kenya. Travel Med Infect Dis, 2009. 7(6): p. 359-66.

Iijima, Y., et al., High prevalence of diarrheagenic Escherichia coli among children with diarrhea in Kenya. Jpn J Infect Dis, 2016.

Makobe, C.K., et al., Molecular characterization of virulence factors in diarrhoeagenic Escherichia coli isolates from children in Nairobi, Kenya. J Infect Dev Ctries, 2012. 6(8): p. 598-604.

Croxen, M.A., et al., Recent advances in understanding enteric pathogenic Escherichia coli. Clin Microbiol Rev, 2013. 26(4): p. 822-80.

Gomez-Duarte, O.G., et al., Detection of Escherichia coli enteropathogens by multiplex polymerase chain reaction from children's diarrheal stools in two Caribbean-Colombian cities. Foodborne Pathog Dis, 2010. 7(2): p. 199-206.

Czeczulin, J.R., et al., Phylogenetic analysis of enteroaggregative and diffusely adherent Escherichia coli. Infect Immun, 1999. 67(6): p. 2692-9.

Muthuirulandi Sethuvel, D.P., et al., Update on: Shigella new serogroups/serotypes and their antimicrobial resistance. Lett Appl Microbiol, 2016.

Mani, S., T. Wierzba, and R.I. Walker, Status of vaccine research and development for Shigella. Vaccine, 2016. 34(26): p. 2887-94.

von Seidlein, L., et al., A multicentre study of Shigella diarrhoea in six Asian countries: disease burden, clinical manifestations, and microbiology. PLoS Med, 2006. 3(9): p. e353.

Lluque, A., et al., Virulence factors and mechanisms of antimicrobial resistance in Shigella strains from periurban areas of Lima (Peru). Int J Med Microbiol, 2015. 305(4-5): p. 480-90.

Sangeetha, A.V., et al., Clinical and microbiological profiles of shigellosis in children. J Health Popul Nutr, 2014. 32(4): p. 580-6.

Karambu, S., et al., Characterization and factors associated with diarrhoeal diseases caused by enteric bacterial pathogens among children aged five years and below attending Igembe District Hospital, Kenya. Pan Afr Med J, 2013. 16: p. 37.

Brooks, J.T., et al., Surveillance for bacterial diarrhea and antimicrobial resistance in rural western Kenya, 1997-2003. Clin Infect Dis, 2006. 43(4): p. 393-401.

Njuguna, C., et al., Enteric pathogens and factors associated with acute bloody diarrhoea, Kenya. BMC Infect Dis, 2016. 16: p. 477.

Njuguna, H.N., et al., Use of population-based surveillance to define the high incidence of shigellosis in an urban slum in Nairobi, Kenya. PLoS One, 2013. 8(3): p. e58437.

World Health Organization. Antimicrobial resistance: global report on surveillance. 2014.

Cole, S.T., Who will develop new antibacterial agents? Philos Trans R Soc Lond B Biol Sci, 2014. 369(1645): p. 20130430.

Sang, W.K., V. Oundo, and D. Schnabel, Prevalence and antibiotic resistance of bacterial pathogens isolated from childhood diarrhoea in four provinces of Kenya. J Infect Dev Ctries, 2012. 6(7): p. 572-8.

Oundo, J.O., et al., High incidence of enteroaggregative Escherichia coli among food handlers in three areas of Kenya: a possible transmission route of travelers' diarrhea. J Travel Med, 2008. 15(1): p. 31-8.

Sang, W.K., et al., Antibiotic susceptibility of Enteric pathogens from the Maasai community, Narok and Kajiado Districts, Kenya. . Afr J Health Sci. , 2011 19: p. 74-79.

Pickering, L.K., Antimicrobial resistance among enteric pathogens. Semin Pediatr Infect Dis, 2004. 15(2): p. 71-7.

World Health Organization. The treatment of diarrhoea: A manual for physicians and other senior health workers. 4 revision. 2005.

Perilla, M.J., et al., Manual for the Laboratory Identification and Antimicrobial Susceptibility Testing of Bacterial Pathogens of Public Health Importance in the Developing World. 2003, World Health Organization: Geneva, Switzerland.

National Committee for Clinical and Laboratory Standards. Performance Standards for Antimicrobial Disk Susceptibility Tests; Approved Standard-Twelfth Edition. 2015.

Chompook, P., et al., Estimating the burden of shigellosis in Thailand: 36-month population-based surveillance study. Bull World Health Organ, 2005. 83(10): p. 739-46.

Mao, Y., et al., Changing trends and serotype distribution of Shigella species in Beijing from 1994 to 2010. Gut Pathog, 2013. 5: p. 21.

GOK. and UNICEF., Anaemia and the Status of Iron, Vitamin A and Zinc in Kenya. The 1999 Micronutrient Survey Report. . 2002: Nairobi.

Bolick, D.T., et al., Zinc deficiency alters host response and pathogen virulence in a mouse model of enteroaggregative Escherichia coli-induced diarrhea. Gut Microbes, 2014. 5(5): p. 618-27.

Medeiros, P., et al., The micronutrient zinc inhibits EAEC strain 042 adherence, biofilm formation, virulence gene expression, and epithelial cytokine responses benefiting the infected host. Virulence, 2013. 4(7): p. 624-33.

Khan, A., et al., Antibiotic resistance, virulence gene, and molecular profiles of Shiga toxin-producing Escherichia coli isolates from diverse sources in Calcutta, India. J Clin Microbiol, 2002. 40(6): p. 2009-15.

Zhang, S., et al., Epidemic characteristics of hemorrhagic fever with renal syndrome in China, 2006-2012. BMC Infect Dis, 2014. 14: p. 384.

Kahsay, A.G. and S. Muthupandian, A review on Sero diversity and antimicrobial resistance patterns of Shigella species in Africa, Asia and South America, 2001-2014. BMC Res Notes, 2016. 9(1): p. 422.

Gupta, A., et al., Laboratory-confirmed shigellosis in the United States, 1989-2002: epidemiologic trends and patterns. Clin Infect Dis, 2004. 38(10): p. 1372-7.

Samosornsuk, S., et al., Preferences for treatment of diarrhoea and dysentery in Kaengkhoi district, Saraburi province, Thailand. J Health Popul Nutr, 2004. 22(2): p. 113-8.

Thompson, C.N., P.T. Duy, and S. Baker, The Rising Dominance of Shigella sonnei: An Intercontinental Shift in the Etiology of Bacillary Dysentery. PLoS Negl Trop Dis, 2015. 9(6): p. e0003708.

Kimondo, J., et al., Ethnobotanical survey of food and medicinal plants of the Ilkisonko Maasai community in Kenya. J Ethnopharmacol, 2015. 175: p. 463-9.

Gebrekidan, A., et al., Prevalence and antimicrobial susceptibility patterns of Shigella among acute diarrheal outpatients in Mekelle hospital, Northern Ethiopia. BMC Res Notes, 2015. 8: p. 611.

Lamboro, T., T. Ketema, and K. Bacha, Prevalence and Antimicrobial Resistance in Salmonella and Shigella Species Isolated from Outpatients, Jimma University Specialized Hospital, Southwest Ethiopia. Can J Infect Dis Med Microbiol, 2016. 2016: p. 4210760.

Qu, M., et al., Prevalence and antibiotic resistance of bacterial pathogens isolated from childhood diarrhea in Beijing, China (2010-2014). Gut Pathog, 2016. 8: p. 31.

Jomezadeh, N., et al., Isolation and antibiotic susceptibility of Shigella species from stool samples among hospitalized children in Abadan, Iran. Gastroenterol Hepatol Bed Bench, 2014. 7(4): p. 218-23.